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Invariant structural core found by TOPOFIT protein structure alignment |
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TOPOFIT Reference: Valentin A. Ilyin, Alexej Abyzov, and Chesley M.Leslin, Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. (preprint) Protein Science (2004), 13:1865-1874. |
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T-DB Reference: Chesley M.Leslin, Alexej Abyzov, and Valentin A. Ilyin, TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method. (accepted). Nucleic Acids Research |
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SCOP family members by ASTRAL codes: all families from SCOP v 1.69 (3,087) were compared in a all-to-all manner. Domains are identified by ASTRAL codes and structural neighbors to the query ASTRAL domain can be retrieved by the ASTRAL code. Pairwise or multiple structural alignments can be visualized in 3D with the FRIEND software or Java Applet. A list of calculated ASTRAL codes sorted by SCOP family name can be found here, a list of calculated ASTRAL codes sorted by SCOP identifiers can be found here |
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