Structural neighbors of 1exs A

TOPOFIT Referece: Valentin A. Ilyin, Alexej Abyzov, and Chesley M.Leslin, Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. (preprint) Protein Science (2004), 13:1865-1874.

`hit #`	`CENTROID`	`PDB_ID`	`PDB_ID`	`Nequiv.`	`RMSD`	`Z-Score`	`Seq. %`	`Pos. %`	`Name`	`ALIGN`
`1`	`NO`	`1exsA(160)`	`1bebB(156)`	`119`	`1.33`	`13.18`	`63.03`	`78.99`	`LIPOCALIN BOVINE BETA-LACTOGLOBULIN LATTICE X`
`2`	`NO`	`1exsA(160)`	`1bebA(156)`	`118`	`1.41`	`11.84`	`62.71`	`78.81`	`LIPOCALIN BOVINE BETA-LACTOGLOBULIN LATTICE X`
`3`	`NO`	`1exsA(160)`	`1qg5A(152)`	`108`	`1.38`	`11.17`	`60.19`	`75.93`	`TRANSPORT PROTEIN HIGH RESOLUTION CRYSTAL STRUCTURE OF THE BOVINE BETA-`
`4`	`NO`	`1exsA(160)`	`1bsqA(162)`	`119`	`1.47`	`11.06`	`63.03`	`78.15`	`HORMONE/GROWTH FACTOR STRUCTURAL AND FUNCTIONAL CONSEQUENCES OF POINT MUTATIONS`
`5`	`NO`	`1exsA(160)`	`1b8eA(152)`	`107`	`1.38`	`11.04`	`61.68`	`76.64`	`TRANSPORT PROTEIN HIGH RESOLUTION CRYSTAL STRUCTURE OF THE BOVINE BETA-`
`6`	`NO`	`1exsA(160)`	`2blg_(162)`	`116`	`1.48`	`10.61`	`60.34`	`74.14`	`TRANSPORT STRUCTURAL BASIS OF THE TANFORD TRANSITION OF BOVINE`
`7`	`NO`	`1exsA(160)`	`3blg_(162)`	`120`	`1.51`	`10.59`	`65`	`80`	`TRANSPORT STRUCTURAL BASIS OF THE TANFORD TRANSITION OF BOVINE`
`8`	`NO`	`1exsA(160)`	`1bj7_(150)`	`109`	`1.44`	`10.43`	`17.43`	`41.28`	`ALLERGEN BOVINE LIPOCALIN ALLERGEN BOS D 2`
`9`	`NO`	`1exsA(160)`	`1bsoA(162)`	`117`	`1.52`	`10.22`	`62.39`	`76.92`	`TRANSPORT PROTEIN 12-BROMODODECANOIC ACID BINDS INSIDE THE CALYX OF BOVINE`
`10`	`NO`	`1exsA(160)`	`1b0o_(161)`	`113`	`1.49`	`10.16`	`61.06`	`73.45`	`LIPOCALIN BOVINE BETA-LACTOGLOBULIN COMPLEXED WITH PALMITATE`
`11`	`NO`	`1exsA(160)`	`1bsy_(162)`	`117`	`1.53`	`10.06`	`62.39`	`76.92`	`TRANSPORT STRUCTURAL BASIS OF THE TANFORD TRANSITION OF BOVINE`
`12`	`NO`	`1exsA(160)`	`1qy0A(157)`	`104`	`1.43`	`9.99`	`21.15`	`47.12`	`TRANSPORT PROTEIN THERMODYNAMICS OF BINDING OF 2-METHOXY-3-ISOPROPYLPYRAZINE`
`13`	`NO`	`1exsA(160)`	`1dv9A(162)`	`113`	`1.51`	`9.88`	`59.29`	`74.34`	`TRANSPORT PROTEIN STRUCTURAL CHANGES ACCOMPANYING PH-INDUCED DISSOCIATION OF`
`14`	`NO`	`1exsA(160)`	`2a2uD(158)`	`115`	`1.54`	`9.74`	`21.74`	`47.83`	`LIPID BINDING PROTEIN THE CRYSTAL STRUCTURES OF A2U-GLOBULIN AND ITS COMPLEX WITH`
`15`	`NO`	`1exsA(160)`	`2a2uB(158)`	`115`	`1.54`	`9.74`	`21.74`	`47.83`	`LIPID BINDING PROTEIN THE CRYSTAL STRUCTURES OF A2U-GLOBULIN AND ITS COMPLEX WITH`
`16`	`NO`	`1exsA(160)`	`2a2uC(158)`	`115`	`1.54`	`9.74`	`21.74`	`47.83`	`LIPID BINDING PROTEIN THE CRYSTAL STRUCTURES OF A2U-GLOBULIN AND ITS COMPLEX WITH`
`17`	`NO`	`1exsA(160)`	`1a3yA(149)`	`106`	`1.47`	`9.7`	`16.04`	`46.23`	`LIPOCALIN ODORANT BINDING PROTEIN FROM NASAL MUCOSA OF PIG`
`18`	`NO`	`1exsA(160)`	`2a2uA(158)`	`116`	`1.56`	`9.58`	`21.55`	`47.41`	`LIPID BINDING PROTEIN THE CRYSTAL STRUCTURES OF A2U-GLOBULIN AND ITS COMPLEX WITH`
`19`	`NO`	`1exsA(160)`	`1e00A(149)`	`105`	`1.47`	`9.58`	`17.14`	`48.57`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`hit #`	`CENTROID`	`PDB_ID`	`PDB_ID`	`Nequiv.`	`RMSD`	`Z-Score`	`Seq. %`	`Pos. %`	`Name`	`ALIGN`
`20`	`NO`	`1exsA(160)`	`1qy2A(157)`	`108`	`1.5`	`9.56`	`18.52`	`44.44`	`TRANSPORT PROTEIN THERMODYNAMICS OF BINDING OF 2-METHOXY-3-ISOPROPYLPYRAZINE`
`21`	`NO`	`1exsA(160)`	`1jv4A(157)`	`108`	`1.5`	`9.48`	`20.37`	`44.44`	`TRANSPORT PROTEIN CRYSTAL STRUCTURE OF RECOMBINANT MAJOR MOUSE URINARY`
`22`	`NO`	`1exsA(160)`	`1dzjA(148)`	`103`	`1.46`	`9.48`	`15.53`	`45.63`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`23`	`NO`	`1exsA(160)`	`1e5pC(147)`	`108`	`1.5`	`9.46`	`12.04`	`36.11`	`LIPOCALIN CRYSTAL STRUCTURE OF APHRODISIN A SEX PHEROMONE FROM`
`24`	`NO`	`1exsA(160)`	`1e06A(149)`	`107`	`1.5`	`9.39`	`15.89`	`45.79`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`25`	`NO`	`1exsA(160)`	`1i06A(156)`	`109`	`1.52`	`9.36`	`18.35`	`43.12`	`TRANSPORT PROTEIN CRYSTAL STRUCTURE OF MOUSE MAJOR URINARY PROTEIN (MUP-I)`
`26`	`NO`	`1exsA(160)`	`1e5pA(149)`	`109`	`1.52`	`9.33`	`11.93`	`33.94`	`LIPOCALIN CRYSTAL STRUCTURE OF APHRODISIN A SEX PHEROMONE FROM`
`27`	`NO`	`1exsA(160)`	`1dzpA(149)`	`106`	`1.5`	`9.32`	`16.04`	`46.23`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`28`	`NO`	`1exsA(160)`	`1e02A(149)`	`106`	`1.51`	`9.21`	`15.09`	`45.28`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`29`	`NO`	`1exsA(160)`	`1e5pD(149)`	`110`	`1.55`	`9.09`	`11.82`	`34.55`	`LIPOCALIN CRYSTAL STRUCTURE OF APHRODISIN A SEX PHEROMONE FROM`
`30`	`NO`	`1exsA(160)`	`1qy1A(157)`	`105`	`1.51`	`9.06`	`21.9`	`45.71`	`TRANSPORT PROTEIN THERMODYNAMICS OF BINDING OF 2-METHOXY-3-ISOPROPYLPYRAZINE`
`31`		`1exsA(160)`	`1dzkA(148)`	`106`	`1.52`	`9.02`	`16.98`	`46.23`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH PYRAZINE`
`32`	`NO`	`1exsA(160)`	`1a3yB(147)`	`101`	`1.48`	`9`	`14.85`	`44.55`	`LIPOCALIN ODORANT BINDING PROTEIN FROM NASAL MUCOSA OF PIG`
`33`	`NO`	`1exsA(160)`	`1e02B(147)`	`101`	`1.49`	`8.91`	`14.85`	`44.55`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`34`	`NO`	`1exsA(160)`	`1i04A(159)`	`113`	`1.59`	`8.87`	`18.58`	`44.25`	`TRANSPORT PROTEIN CRYSTAL STRUCTURE OF MOUSE MAJOR URINARY PROTEIN-I FROM`
`35`	`NO`	`1exsA(160)`	`1i05A(156)`	`109`	`1.57`	`8.73`	`17.43`	`41.28`	`TRANSPORT PROTEIN CRYSTAL STRUCTURE OF MOUSE MAJOR URINARY PROTEIN (MUP-I)`
`36`	`NO`	`1exsA(160)`	`1dzmA(149)`	`107`	`1.56`	`8.7`	`15.89`	`44.86`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`37`	`NO`	`1exsA(160)`	`1mup_(157)`	`109`	`1.57`	`8.66`	`16.51`	`44.04`	`PHEROMONE-BINDING MAJOR URINARY PROTEIN COMPLEX WITH 2-(SEC-BUTYL)`
`38`	`NO`	`1exsA(160)`	`2a2gD(158)`	`116`	`1.63`	`8.64`	`23.28`	`48.28`	`LIPID-BINDING PROTEIN THE CRYSTAL STRUCTURES OF A2U-GLOBULIN AND ITS COMPLEX WITH`
`39`	`NO`	`1exsA(160)`	`2a2gA(158)`	`116`	`1.63`	`8.64`	`23.28`	`48.28`	`LIPID-BINDING PROTEIN THE CRYSTAL STRUCTURES OF A2U-GLOBULIN AND ITS COMPLEX WITH`
`hit #`	`CENTROID`	`PDB_ID`	`PDB_ID`	`Nequiv.`	`RMSD`	`Z-Score`	`Seq. %`	`Pos. %`	`Name`	`ALIGN`
`40`	`NO`	`1exsA(160)`	`2a2gB(158)`	`116`	`1.63`	`8.64`	`23.28`	`48.28`	`LIPID-BINDING PROTEIN THE CRYSTAL STRUCTURES OF A2U-GLOBULIN AND ITS COMPLEX WITH`
`41`	`NO`	`1exsA(160)`	`2a2gC(158)`	`116`	`1.63`	`8.64`	`23.28`	`48.28`	`LIPID-BINDING PROTEIN THE CRYSTAL STRUCTURES OF A2U-GLOBULIN AND ITS COMPLEX WITH`
`42`	`NO`	`1exsA(160)`	`1dzmB(147)`	`107`	`1.58`	`8.39`	`17.76`	`46.73`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`43`	`NO`	`1exsA(160)`	`1e5pB(148)`	`105`	`1.57`	`8.34`	`11.43`	`35.24`	`LIPOCALIN CRYSTAL STRUCTURE OF APHRODISIN A SEX PHEROMONE FROM`
`44`	`NO`	`1exsA(160)`	`1dzpB(147)`	`107`	`1.59`	`8.32`	`15.89`	`46.73`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`45`	`NO`	`1exsA(160)`	`1e06B(147)`	`104`	`1.56`	`8.3`	`14.42`	`44.23`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`46`	`NO`	`1exsA(160)`	`1dzkB(148)`	`104`	`1.57`	`8.22`	`17.31`	`46.15`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH PYRAZINE`
`47`	`NO`	`1exsA(160)`	`1gm6A(158)`	`111`	`1.62`	`8.21`	`19.82`	`48.65`	`LIPOCALIN 3-D STRUCTURE OF A SALIVARY LIPOCALIN FROM BOAR`
`48`	`NO`	`1exsA(160)`	`1dzjB(148)`	`105`	`1.59`	`8.11`	`15.24`	`44.76`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`49`	`NO`	`1exsA(160)`	`1e00B(148)`	`106`	`1.61`	`7.99`	`17.92`	`45.28`	`ODORANT BINDING PROTEIN PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH`
`50`	`NO`	`1exsA(160)`	`1hqpA(149)`	`105`	`1.61`	`7.89`	`16.19`	`44.76`	`SIGNALING PROTEIN CRYSTAL STRUCTURE OF A TRUNCATED FORM OF PORCINE ODORANT-`
`51`	`NO`	`1exsA(160)`	`1ew3A(159)`	`106`	`1.63`	`7.64`	`23.58`	`56.6`	`ALLERGEN CRYSTAL STRUCTURE OF THE MAJOR HORSE ALLERGEN EQU C 1`
`52`	`NO`	`1exsA(160)`	`1df3A(162)`	`111`	`1.69`	`7.42`	`18.92`	`45.05`	`TRANSPORT PROTEIN SOLUTION STRUCTURE OF A RECOMBINANT MOUSE MAJOR URINARY`
`53`	`NO`	`1exsA(160)`	`1obpB(155)`	`86`	`1.48`	`7.42`	`16.28`	`39.53`	`ODORANT-BINDING PROTEIN ODORANT-BINDING PROTEIN FROM BOVINE NASAL MUCOSA`
`54`	`NO`	`1exsA(160)`	`1pboB(151)`	`89`	`1.54`	`7.11`	`15.73`	`39.33`	`ODORANT-BINDING COMPLEX OF BOVINE ODORANT BINDING PROTEIN (OBP) WITH A`
`55`	`NO`	`1exsA(160)`	`1pboA(157)`	`88`	`1.55`	`6.88`	`15.91`	`38.64`	`ODORANT-BINDING COMPLEX OF BOVINE ODORANT BINDING PROTEIN (OBP) WITH A`
`56`	`NO`	`1exsA(160)`	`1obpA(158)`	`82`	`1.52`	`6.66`	`15.85`	`37.8`	`ODORANT-BINDING PROTEIN ODORANT-BINDING PROTEIN FROM BOVINE NASAL MUCOSA`
`57`	`NO`	`1exsA(160)`	`1brq_(175)`	`92`	`1.69`	`5.87`	`13.04`	`31.52`	`RETINOL TRANSPORT RETINOL BINDING PROTEIN (APO FORM)`
`58`	`NO`	`1exsA(160)`	`1qabF(171)`	`88`	`1.65`	`5.87`	`17.05`	`36.36`	`TRANSPORT PROTEIN THE STRUCTURE OF HUMAN RETINOL BINDING PROTEIN WITH ITS`
`59`		`1exsA(160)`	`1hbp_(175)`	`91`	`1.68`	`5.86`	`16.48`	`31.87`	`RETINOL TRANSPORT RETINOL BINDING PROTEIN (HOLO FORM) (HOLO BRBP)`
`hit #`	`CENTROID`	`PDB_ID`	`PDB_ID`	`Nequiv.`	`RMSD`	`Z-Score`	`Seq. %`	`Pos. %`	`Name`	`ALIGN`
`60`	`NO`	`1exsA(160)`	`1brp_(175)`	`91`	`1.69`	`5.81`	`15.38`	`34.07`	`RETINOL TRANSPORT RETINOL BINDING PROTEIN (HOLO FORM)`
`61`	`NO`	`1exsA(160)`	`1fel_(175)`	`91`	`1.69`	`5.78`	`17.58`	`32.97`	`TRANSPORT PROTEIN RETINOL BINDING PROTEIN COMPLEXED WITH FENRETINIDE`
`62`	`NO`	`1exsA(160)`	`1rbp_(176)`	`87`	`1.66`	`5.73`	`14.94`	`33.33`	`RETINOL TRANSPORT RETINOL BINDING PROTEIN`
`63`	`NO`	`1exsA(160)`	`1rlbF(174)`	`88`	`1.67`	`5.69`	`18.18`	`32.95`	`COMPLEX (PROTEIN/PROTEIN) RETINOL BINDING PROTEIN COMPLEXED WITH TRANSTHYRETIN`
`64`	`NO`	`1exsA(160)`	`1dfvA(173)`	`87`	`1.67`	`5.67`	`14.94`	`36.78`	`SUGAR BINDING PROTEIN CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL GELATINASE ASSOCIATED`
`65`		`1exsA(160)`	`1cj5A(162)`	`90`	`1.71`	`5.51`	`57.78`	`72.22`	`TRANSPORT PROTEIN BOVINE BETA-LACTOGLOBULIN A`
`66`	`NO`	`1exsA(160)`	`1qqsA(174)`	`86`	`1.68`	`5.49`	`11.63`	`36.05`	`SUGAR BINDING PROTEIN NEUTROPHIL GELATINASE ASSOCIATED LIPOCALIN HOMODIMER`
`67`	`NO`	`1exsA(160)`	`1aqb_(175)`	`87`	`1.69`	`5.44`	`14.94`	`33.33`	`RETINOL TRANSPORT RETINOL-BINDING PROTEIN (RBP) FROM PIG PLASMA`
`68`	`NO`	`1exsA(160)`	`1qabE(180)`	`87`	`1.72`	`5.19`	`18.39`	`36.78`	`TRANSPORT PROTEIN THE STRUCTURE OF HUMAN RETINOL BINDING PROTEIN WITH ITS`
`69`	`NO`	`1exsA(160)`	`1fem_(177)`	`95`	`1.78`	`5.17`	`13.68`	`26.32`	`TRANSPORT PROTEIN RETINOL BINDING PROTEIN COMPLEXED WITH RETINOIC ACID`

`Reduce the amount of Hits by using more stringet cut-offs and resort the data`

`Ne`		`Set this limit for Ne, the higher the more refined the results will be`
`RMSD`		`Set this limit for RMSD, the lower the more refined the results will be`
`Zscore Limit`		`Set this limit for Zscore, the higher the limit the more refined the results will be`
`% IDENTITY`		`Set this limit to reduce the amount of structures with high sequence similarity`
`SORT values`		`Resort you results`