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Invariant structural core found by TOPOFIT protein structure alignment |
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TOPOFIT Reference: Valentin A. Ilyin, Alexej Abyzov, and Chesley M.Leslin, Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. (preprint) Protein Science (2004), 13:1865-1874. |
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T-DB Reference: Chesley M.Leslin, Alexej Abyzov, and Valentin A. Ilyin, TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method. (accepted). Nucleic Acids Research |
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CATH identifier: 2930 CATH domains were compared in a all-to-all manner. Domains are identified by CATH codes and structural neighbors to the query CATH domain can be retrieved by the CATH code. Pairwise or multiple structural alignments can be visualized in 3D with the FRIEND software or Java Applet. A list of calculated CATH codes sorted by CAT classification name can be found here |
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